PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020128-PA
Common NameOsI_20507
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 161aa    MW: 17629.9 Da    PI: 9.6161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020128-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-0650871254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  BGIOSGA020128-PA 50 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 87
                      77788899********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.7443887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.77E-74892No hitNo description
SuperFamilySSF474592.36E-1248105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00614993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-95296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVQSNTDRLH DHHQDAGSPS PATRSSPGSP AAAKKPRIEA PSPMPTFKVR KEKLGDRITA  60
LQQLVSPFGK TDTASVLHEA IEYIKFLHDQ VASLSSPYLR CGRPVQLQHQ QGSHKVNGNC  120
EGKQLDLRSR GLCLVPVAST YTVASETATE FWHPTFGGTF R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.802830.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166316770.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378340.0CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638165.11e-115PREDICTED: transcription factor bHLH68 isoform X3
RefseqXP_015638164.11e-115PREDICTED: transcription factor bHLH68 isoform X2
RefseqXP_015638163.11e-114PREDICTED: transcription factor bHLH68 isoform X1
SwissprotQ8GXT33e-50BH123_ARATH; Transcription factor bHLH123
TrEMBLB8AZQ51e-118B8AZQ5_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA020128-PA1e-118(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-51bHLH family protein